Training materials
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Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Python - Warm-up for statistics and machine learning
elixir ai-ml work-in-progress jupyter-notebook python -
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
covid19 gmod jbrowse1 -
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
ncbi covid19 upload -
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
covid19 virology one-health -
Removal of human reads from SARS-CoV-2 sequencing data
covid19 -
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
covid19 virology one-health -
Automating Galaxy workflows using the command line
workflows variant-analysis covid19 -
Submitting sequence data to ENA
covid19 -
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
covid19 one-health