Training materials
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Optimizing DNA Sequences for Biological Functions using a DNA LLM
elixir ai-ml Large Language Model work-in-progress jupyter-notebook gai-llm -
Deep Learning (without Generative Artificial Intelligence) using Python
elixir ai-ml work-in-progress jupyter-notebook -
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Neural networks using Python
elixir ai-ml work-in-progress jupyter-notebook -
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Foundational Aspects of Machine Learning using Python
elixir ai-ml jupyter-notebook machine-learning -
Inferring single cell trajectories with Monocle3 (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook single-cell-CS-code -
Inferring single cell trajectories with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook single-cell-CS-code