Training materials
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Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook single-cell-CS-code -
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Best practices for workflows in GitHub repositories
ro-crate jupyter-notebook -
RO-Crate in Python
ro-crate jupyter-notebook -
Optimizing DNA Sequences for Biological Functions using a DNA LLM
elixir ai-ml Large Language Model work-in-progress jupyter-notebook gai-llm -
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Deep Learning (without Generative Artificial Intelligence) using Python
elixir ai-ml work-in-progress jupyter-notebook -
Neural networks using Python
elixir ai-ml work-in-progress jupyter-notebook